142 scientific agent skills, one command away

142 scientific agent skills, one command away

`K-Dense-AI/scientific-agent-skills` bundles 142 MIT-licensed scientific skills (v2.45.0, 26.8K stars) for Claude Code, Cursor, Codex, Gemini CLI, and Antigravity into a single `npx` command. The article covers the four highest-value skills for AI engineers (Literature Review with a 7-stage PRISMA pipeline, Paper Lookup across 10 academic databases, Infographics with AI quality-scoring iteration, and Peer Review with statistical rigor checks), the complete install walkthrough, three copy-paste usage examples, and an honest caveats section covering the unverifiable "160,000+ scientists" claim, the open Trivy security bug (Issue #162), zero community feedback due to the repo being only 3–4 days old, and the absence of any quantitative benchmarks across all 142 skills.

Today's Trending Agent Skills
2026/6/2 · 2:26
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研究速览

Turning any AI agent into a literature-review machine used to mean writing a pile of custom prompts and wiring together half a dozen Python scripts by hand. K-Dense-AI/scientific-agent-skills26.8K stars, MIT-licensed, v2.45.0 — bundles 142 ready-to-invoke scientific skills across 18 categories into a single npx install. 1
The repo landed on GitHub Trending #7 in mid-May and picked up +637 stars in 24 hours. 2 It supports Claude Code, Cursor, Codex, Gemini CLI, and Google Antigravity — anything that follows the open Agent Skills standard.
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What it does

The library sits inside the Scientific Communication category — 27 skills — which is where most AI engineers will spend their time. The standouts:
Literature Review runs a 7-stage PRISMA-compliant pipeline: PICO framework scoping → multi-database search (Google Scholar, arXiv, PubMed, Semantic Scholar) → automated PRISMA flowchart → thematic synthesis → DOI cross-verification via CrossRef → PDF export in APA, Nature, Vancouver, Chicago, or IEEE format. 3 The agent handles deduplication and citation impact scoring (papers under 3 years old need 20+ citations to count as noteworthy; landmark papers 7+ years old need 1,000+).
Paper Lookup gives a single unified interface across 10 academic databases: PubMed (37M+ citations), OpenAlex (250M+ works), Semantic Scholar (200M+ papers with AI TLDRs), Crossref (150M+ DOI records), CORE (37M+ full texts), Unpaywall (open-access status), and four preprint servers. 4 You prompt the agent with a research question; it queries all of them and returns structured JSON per database.
Infographics generates publication-ready figures using Nano Banana Pro for rendering and Gemini 3 Pro for quality review, with 10 chart types, 8 industry style presets, and 3 colorblind-safe palettes. 5 The built-in iteration loop scores output on five dimensions (visual hierarchy, typography, data visualization, color, overall impact, each 0–2); it stops early when the total clears the document-type threshold (marketing: 8.5, reports: 8.0, presentations: 7.5).
Peer Review follows a 7-stage review protocol: initial assessment, section-by-section reading, statistical rigor check (normality assumptions, effect sizes, multiple testing corrections, sample power analysis), reproducibility audit, figure evaluation, ethics review, and writing quality. 6 It maps against CONSORT, STROBE, PRISMA, and ARRIVE reporting standards.
The remaining 115 skills span bioinformatics (23 skills), data analysis (19), machine learning (14), cheminformatics and drug discovery (10), clinical research (8), and 12 more sub-disciplines. 1 The most recent major addition (v2.39.0, May 19) integrated Exa neural search, which replaces keyword-based academic queries with semantic vector search across scholarly domains. 7
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Install

Prerequisites: Python 3.13+, uv package manager, and any Agent Skills-compatible agent client (macOS, Linux, or Windows with WSL2).
Install uv if you don't have it:
curl -LsSf https://astral.sh/uv/install.sh | sh
Then install the skills bundle — one command covers all supported agents:
npx skills add K-Dense-AI/scientific-agent-skills
Alternatively, with GitHub CLI v2.90.0+:
# install everything
gh skill install K-Dense-AI/scientific-agent-skills

# or pin a specific version
gh skill install K-Dense-AI/scientific-agent-skills --pin v2.45.0

# install only the skills you need
gh skill install K-Dense-AI/scientific-agent-skills --skill literature-review
Once installed, your agent discovers the skills automatically. You can also invoke them by name in any prompt. 8
K-Dense Inc. explicitly warns: "Do not install everything at once. Only install the skills you actually need for your work." 8 Each skill can pull in its own Python dependencies; installing all 142 at once significantly increases setup time and token overhead.

Usage examples

Run a literature review — in Claude Code or Cursor, open a new task and prompt:
Use the literature-review skill to review papers on
transformer-based protein structure prediction published
2022–2025. Output a PRISMA-compliant PDF with Nature citation style.
The agent will ask clarifying PICO questions (Population, Intervention, Comparison, Outcome), then run the 7-stage pipeline end to end.
Batch-fetch papers across databases:
Use paper-lookup to find all 2024 papers on GLP-1 receptor
agonists in Type 2 diabetes. Cross-reference PubMed and
OpenAlex, then pull open-access PDFs via Unpaywall.
Generate an infographic from scratch with auto-research:
python skills/infographics/scripts/generate_infographic.py \
  "5 benefits of exercise" \
  -o figures/exercise.png \
  --type list \
  --style healthcare \
  --research
The --research flag triggers Perplexity Sonar to gather current data before rendering. 5
For a real-world comparison: Yu Dong, writing for Towards Data Science, built a custom storytelling-visualization skill using the same framework and cut a previously ~1-hour weekly visualization workflow to under 10 minutes. 9

Community signals and known caveats

The honest picture on community feedback: essentially none yet. The repo is roughly 3–4 days old as of June 1, which explains the silence on Reddit (zero mentions across r/ClaudeCode, r/ClaudeAI, r/vibecoding, r/bioinformatics) and Hacker News. 10 The 26.8K stars are real traction, but they reflect Trending page discovery more than sustained daily usage.
A few things to know before committing:
  • The "160,000+ scientists" claim is unverifiable. Every search result for that figure traces back to the README itself — no independent source corroborates it. 2
  • Issue triage is unstructured. Five open issues as of June 1, none with labels, milestones, or project assignments. Four of them have zero maintainer responses. 11
  • A CI security bug is open and unacknowledged. Issue #162 reports that the Trivy security scanner returns exit code 0 even when vulnerabilities exist — a logic flaw in the scan script that can silently miss security findings. 12
  • No quantitative benchmarks anywhere. None of the 142 SKILL.md files include before/after performance data. The only timing comparison available is K-Dense's own marketing copy: same drug-repurposing task takes 4–8 hours with the open-source skills vs. ~15 minutes with their paid K-Dense Web platform. 13 That comparison is useful context but comes from the vendor, not an independent test.
  • Token overhead can be significant. AcademicForge, a project that imports this library as a dependency, notes that individual skill files run ~420 lines of SKILL.md plus ~300KB of reference material each. Token costs at scale are real.
Sreya Vangara (Stanford PhD) put the broader signal well: 14
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That's the gap this library is filling — the question is whether the depth holds up under real workloads.

When NOT to use this

  • You need a fully autonomous pipeline. The open-source skills require you to orchestrate every step — K-Dense's own positioning is "you are the orchestration layer." 13 For end-to-end autonomous execution, their paid K-Dense Web tier (multi-agent, cloud GPU, 200+ skills including 60 exclusive ones) is what they actually built for that use case.
  • Your domain is outside natural and exact sciences. The library is explicitly weighted toward biology, chemistry, and physics. A GitHub issue requesting social science and musicology support has been open since April with only one assignee and four comments. 11
  • You need production-hardened security. The open Trivy false-negative issue means the CI security scan may not catch vulnerabilities. For security-sensitive workflows, verify independently.
  • You want community-vetted quality across all 142 skills. Maintenance quality varies. The top-5 most-installed skills (scientific-writing: 608 installs, scientific-critical-thinking: 589, scientific-visualization: 588, scientific-brainstorming: 585, literature-review: 572) 15 have had the most real-world exposure. Skills deeper in the catalog — particularly the specialty categories like proteomics or neuroscience — have had far fewer users, and the lack of GitHub issue feedback means quality gaps may not surface until you run them.

Cover: AI-generated illustration

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